.. Brioche documentation master file, created by
   sphinx-quickstart on Wed Jan 21 14:49:31 2026.
   You can adapt this file completely to your liking, but it should at least
   contain the root `toctree` directive.

Brioche documentation
=====================

Landing page

.. toctree::
   :maxdepth: 2
   :caption: Main

   introduction
   installation
   setting_up_a_run
   results
   citations
   faq

.. toctree::
   :maxdepth: 2
   :caption: Use cases

   usecases/usecase1_remapping
   usecases/usecase2_insilico_genotyping
   usecases/usecase3_redundancy_accuracy
   usecases/usecase4_merge_datasets